I did some testing today:
The setup is as follows:
Flyduino v2.1 Genuine WM+, BMA020, BMP085, HMC5883L, QuadX, SumPPM, HK SS18A ESC, eMax CF2822
I have my Copter stationary on the table and pressing it down while I power up the engines in acro mode/hover mode
1. Test: Multiwii 1.8p2 with imported Stability mode from MultiWii 1.7
2. Test: Multiwii 1.8p2 standard
3. Test: Multiwii Dev20111029 standard with trustedAccZ disabled
all PID etc are the same.
1. Test (old stab 1.7) A: Engines off

1. Test (old stab 1.7) B: Engines on

2. Test A: Engines off

2. Test B: Engines on

Remember: I am holding the copter flat on the table so absolutely NO real drift is happening.
I notice the decrease of AccZ while powering up - this is what you already mentioned and tried to fix in the current dev.
You can see that the copter thinks he is tilted to left front, so he would try to correct it by increasing throttle to that motor if he is in hover mode.
I also noticed, that the Mag is 90° off if I use the old stability mode. (I did no recalibration after uploading 1.8p2 standard)but that is corrected in 1.8.
While doing the test flights with 1.8p2 standard I noticed that the copter is drifting to right rear - so what I found here is absolutely expected!
flying with 1.7 stab mode is far better.
So why is AccZ doing this strange stuff???
3. Test A: Engines off

3. Test B: Engines on

As far as I can say it until now: I think the drift issue is fixed in the current dev...
I did some flight tests in my basement and the results look very promising, the drift seems to be eliminated and the copter behaves very smooth, it is way more flyable than 1.7.
I managed ot land on my desk and fly through my doors. COOL!
I hope these results help you in tracking down the issue for sure Alex!
Should I do the same test with the current dev and trusted AccZ on or is it unneccesary for you?
Nils